STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73755.1KEGG: cch:Cag_1883 2.4e-91 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (333 aa)    
Predicted Functional Partners:
EDS73756.1
KEGG: rha:RHA1_ro09047 8.5e-06 ABC peptide transporter, permease component K02033; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
oppC
COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.997
EDS73757.1
KEGG: rha:RHA1_ro09047 1.6e-46 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.993
EDS75547.1
KEGG: rha:RHA1_ro09047 1.9e-41 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.990
EDS75551.1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 4.8e-07 acetate kinase K00925; COG: COG4166 ABC-type oligopeptide transport system, periplasmic component; Psort location: Cellwall, score: 9.18.
 
 0.962
EDS73758.1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 1.7e-28 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Cellwall, score: 9.18.
 
 0.962
EDS74997.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A0126 1.6e-37 ABC transporter component K06020; COG: COG4555 ABC-type Na+ transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    
0.900
ecfA
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
     
0.900
EDS74327.1
KEGG: lwe:lwe2133 1.8e-61 ABC transporter, ATP-binding protein K06020; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     
0.900
EDS73754.1
KEGG: reh:H16_B0716 3.6e-88 dppF3; ABC-type transporter, ATPase component: PepT family; COG: COG4608 ABC-type oligopeptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 
0.871
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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