STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73797.1Methyltransferase domain protein; KEGG: spt:SPA1038 1.0e-44 rrmA; rRNA guanine-N1-methyltransferase K00563; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87. (271 aa)    
Predicted Functional Partners:
EDS74951.1
Polyprenyl synthetase; KEGG: cac:CAC2080 2.9e-61 predicted geranylgeranyl pyrophosphate synthase K00795; COG: COG0142 Geranylgeranyl pyrophosphate synthase; Psort location: Cytoplasmic, score: 9.65; Belongs to the FPP/GGPP synthase family.
  
 
 0.542
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.530
EDS73800.1
RNA methyltransferase, TrmH family; KEGG: mmo:MMOB1200 1.9e-18 spoU; spoU class tRNA/rRNA methylase K03437; COG: COG0566 rRNA methylases; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.530
EDS73798.1
Acetyltransferase, GNAT family; KEGG: lsl:LSL_0634 3.3e-53 phosphinothricin N-acetyltransferase K00680; COG: COG1247 Sortase and related acyltransferases; Psort location: Cytoplasmic, score: 8.87.
       0.529
EDS73799.1
Hypothetical protein; KEGG: lpl:lp_2552 0.0072 hisE; phosphoribosyl-ATP pyrophosphatase K01523; Psort location: Cytoplasmic, score: 8.87.
       0.522
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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