STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73848.13D domain protein; COG: COG3584 Uncharacterized protein conserved in bacteria. (309 aa)    
Predicted Functional Partners:
EDS73849.1
Hydrolase, TatD family; KEGG: bca:BCE_0037 1.9e-66 deoxyribonuclease, TatD family K03424; COG: COG0084 Mg-dependent DNase; Psort location: Cytoplasmic, score: 8.87.
     
 0.784
EDS75082.1
COG: COG5401 Spore germination protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.743
EDS73819.1
KEGG: oih:OB0074 1.3e-40 stage II sporulation protein E K06382; COG: COG2208 Serine phosphatase RsbU, regulator of sigma subunit; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.683
EDS73853.1
YabG peptidase U57; COG: NOG07862 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.659
EDS75999.1
Putative sporulation protein YqfD; COG: NOG07866 non supervised orthologous group.
  
     0.638
spoIIP
Stage II sporulation protein P; COG: NOG06343 non supervised orthologous group.
  
     0.612
EDS75152.1
Polysaccharide biosynthesis protein; KEGG: cac:CAC3205 0.0061 spoIIE; stage II sporulation protein E, serine phosphatase family K06382; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.543
EDS75303.1
KEGG: ecj:JW3597 4.4e-06 rfaL; O-antigen ligase K02847; COG: NOG36406 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.521
EDS73715.1
Purine catabolism regulatory protein-like family; KEGG: shn:Shewana3_2682 0.00057 transcriptional regulator, CdaR K01694; COG: COG2508 Regulator of polyketide synthase expression; Psort location: Cytoplasmic, score: 8.87.
  
     0.509
EDS73847.1
Hypothetical protein; KEGG: cpv:cgd7_440 0.00019 RIO-like kinase domain; N-terminal region conserved K07179; COG: KOG1181 FOG: Low-complexity; Psort location: Cytoplasmic, score: 8.87.
       0.491
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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