STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73849.1Hydrolase, TatD family; KEGG: bca:BCE_0037 1.9e-66 deoxyribonuclease, TatD family K03424; COG: COG0084 Mg-dependent DNase; Psort location: Cytoplasmic, score: 8.87. (252 aa)    
Predicted Functional Partners:
EDS76064.1
Radical SAM domain protein; KEGG: pca:Pcar_1695 3.7e-31 deoxyribonuclease, TatD family K03424; COG: COG0535 Predicted Fe-S oxidoreductases; Psort location: Cytoplasmic, score: 8.87.
     0.933
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 0.870
EDS73848.1
3D domain protein; COG: COG3584 Uncharacterized protein conserved in bacteria.
     
 0.784
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
    
 0.670
fabD
[acyl-carrier-protein] S-malonyltransferase; KEGG: cno:NT01CX_0924 1.8e-70 fabD; malonyl CoA-acyl carrier protein transacylase K00645; COG: COG0331 (acyl-carrier-protein) S-malonyltransferase; Psort location: Cytoplasmic, score: 8.87.
      0.647
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
 
    0.603
EDS73854.1
KEGG: sha:SH2518 7.6e-47 ksgA; putative dimethyladenosine transferase K02528; COG: COG0030 Dimethyladenosine transferase (rRNA methylation); Psort location: Cytoplasmic, score: 8.87.
 
  
 0.594
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
  
  
 0.489
EDS73847.1
Hypothetical protein; KEGG: cpv:cgd7_440 0.00019 RIO-like kinase domain; N-terminal region conserved K07179; COG: KOG1181 FOG: Low-complexity; Psort location: Cytoplasmic, score: 8.87.
       0.485
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.473
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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