STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiAHypothetical protein; Involved in cell division and chromosome segregation. (315 aa)    
Predicted Functional Partners:
EDS73859.1
Hypothetical protein; Displays ATPase and GTPase activities.
 
  
 0.891
EDS73857.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 4.2e-06 dam; adenine-specific DNA methyltransferase K06223; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
     
 0.779
EDS73856.1
Hypothetical protein.
       0.757
EDS75115.1
Helix-turn-helix protein, YlxM/p13 family; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
  
 0.748
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
 
     0.745
EDS74281.1
Hypothetical protein; COG: COG2384 Predicted SAM-dependent methyltransferase.
  
     0.702
EDS75407.1
COG: COG4472 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
  
     0.655
trxB
KEGG: bcl:ABC3038 3.0e-84 trxB; thioredoxin reductase K00384; COG: COG0492 Thioredoxin reductase; Psort location: Cytoplasmic, score: 9.65.
  
  
 0.588
EDS73854.1
KEGG: sha:SH2518 7.6e-47 ksgA; putative dimethyladenosine transferase K02528; COG: COG0030 Dimethyladenosine transferase (rRNA methylation); Psort location: Cytoplasmic, score: 8.87.
     
 0.567
EDS74893.1
COG: COG1358 Ribosomal protein HS6-type (S12/L30/L7a).
  
     0.566
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.