Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS73867.1Hypothetical protein; KEGG: buc:BU347 0.00034 rne; ribonuclease E; COG: COG1106 Predicted ATPases; Psort location: Cytoplasmic, score: 8.87. (367 aa)    
Predicted Functional Partners:
EDS73866.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.799
FbpA
Fibronectin-binding protein A domain protein; KEGG: fnu:FN0522 1.5e-05 exonuclease SBCC K03546; COG: COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP; Psort location: Cytoplasmic, score: 8.87.
  
    0.638
EDS74332.1
Hypothetical protein; COG: NOG08812 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.420
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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