STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73878.1Polysaccharide deacetylase; KEGG: spd:SPD_1309 1.4e-36 pgdA; peptidoglycan GlcNAc deacetylase K01463; COG: COG0726 Predicted xylanase/chitin deacetylase. (425 aa)    
Predicted Functional Partners:
EDS75646.1
Hypothetical protein; KEGG: cpr:CPR_0949 9.9e-09 chitinase B K01183; COG: COG3469 Chitinase.
    
 0.524
EDS73876.1
ABC transporter, ATP-binding protein; KEGG: bur:Bcep18194_B1962 1.2e-64 ABC efflux pump, fused ATPase and inner membrane subunits K06021:K06022; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.416
EDS73875.1
Hypothetical protein; COG: NOG16835 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.413
EDS73874.1
COG: COG2832 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score: 9.99.
       0.412
EDS73877.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0716 1.1e-70 ATPase K06148; COG: COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.412
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.