STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbACOG: COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component; Psort location: CytoplasmicMembrane, score: 10.00. (257 aa)    
Predicted Functional Partners:
EDS73935.1
KEGG: cac:CAC2328 4.2e-62 polysaccharide ABC transporter, ATPase component K01990; COG: COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.996
EDS75235.1
ABC transporter, ATP-binding protein; KEGG: baa:BA_0359 8.0e-75 ABC transporter K01990; COG: COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.987
EDS73933.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 3.5e-106 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.973
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
     
 0.777
EDS73937.1
Glycosyltransferase, group 1 family protein; KEGG: pub:SAR11_0559 7.0e-15 rfaK; 1,2-N-acetylglucosaminetransferase; COG: COG0438 Glycosyltransferase; Psort location: CytoplasmicMembrane, score: 9.75.
  
  
 0.495
EDS73942.1
Glycosyltransferase, group 2 family protein; KEGG: vfi:VF0174 6.8e-46 beta-D-GlcNAc beta-1,3-galactosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.485
EDS73941.1
Glycosyltransferase, group 2 family protein; KEGG: spj:MGAS2096_Spy0675 4.8e-45 glycosyltransferase involved in cell wall biogenesis; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.459
EDS73939.1
Glycosyltransferase, group 2 family protein; KEGG: aci:ACIAD0074 2.2e-33 putative glycosyl transferase family 2; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.458
EDS73936.1
Hypothetical protein; COG: NOG36424 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.444
EDS75233.1
Glycosyltransferase, group 2 family protein; KEGG: bcl:ABC3103 2.3e-86 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; COG: COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.430
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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