STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73944.1Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: eca:ECA1420 1.9e-50 rfbP, asmG; undecaprenyl-phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00. (459 aa)    
Predicted Functional Partners:
EDS74973.1
Chain length determinant protein; KEGG: chu:CHU_0880 6.0e-28 wzc; tyrosine-protein kinase K08252; COG: COG3944 Capsular polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.976
EDS74974.1
Chain length determinant protein; KEGG: ava:Ava_1045 1.3e-29 lipopolysaccharide biosynthesis K00903; COG: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.975
EDS73933.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 3.5e-106 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.931
EDS73937.1
Glycosyltransferase, group 1 family protein; KEGG: pub:SAR11_0559 7.0e-15 rfaK; 1,2-N-acetylglucosaminetransferase; COG: COG0438 Glycosyltransferase; Psort location: CytoplasmicMembrane, score: 9.75.
 
  
 0.909
EDS75394.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: cno:NT01CX_1463 6.9e-101 spsC; spore coat polysaccharide biosynthesis protein SpsC K01726; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.896
EDS73938.1
Polysaccharide biosynthesis protein; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.881
EDS74353.1
Hypothetical protein; KEGG: sha:SH0994 0.0026 agrC; AgrC K07706; COG: NOG17531 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.851
EDS73943.1
Core-2/I-Branching enzyme; KEGG: rno:64134 7.0e-12 Xylt2; xylosyltransferase II K00771; COG: NOG16359 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 7.80.
  
  
 0.835
cps4K
Capsular polysaccharide biosynthesis protein Cps4K; KEGG: vfi:VF0192 2.6e-60 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.797
EDS75171.1
Hypothetical protein; KEGG: vfi:VF0192 0.00030 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; COG: COG0451 Nucleoside-diphosphate-sugar epimerases.
  
  
 0.797
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.