STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73946.1ErfK/YbiS/YcfS/YnhG; COG: COG5263 FOG: Glucan-binding domain (YG repeat). (375 aa)    
Predicted Functional Partners:
EDS73732.1
Glycosyl hydrolase family 25; KEGG: spd:SPD_1403 9.6e-25 lytC; 1,4-beta-N-acetylmuramidase, putative K01227; COG: COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); Psort location: Cytoplasmic, score: 8.87.
     0.735
EDS75724.1
KEGG: sth:STH3039 2.0e-32 N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
    
 0.705
EDS75651.1
Glycosyl hydrolase family 25; KEGG: spd:SPD_1403 4.0e-13 lytC; 1,4-beta-N-acetylmuramidase, putative K01227; COG: COG1388 FOG: LysM repeat.
 
     0.563
EDS73940.1
Hypothetical protein; COG: NOG18355 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.420
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.