STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73950.1KEGG: bce:BC0896 1.3e-31 S-layer protein / peptidoglycan endo-beta-N-acetylglucosaminidase K01238; COG: COG5263 FOG: Glucan-binding domain (YG repeat); Psort location: Extracellular, score: 9.04. (1219 aa)    
Predicted Functional Partners:
EDS73949.1
M6 family metalloprotease domain protein; KEGG: pfa:PF14_0112 0.0018 POM1, putative K00961; COG: COG5263 FOG: Glucan-binding domain (YG repeat).
 
    
0.537
EDS75571.1
Hypothetical protein; COG: COG3937 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.533
EDS74971.1
Cell envelope-like function transcriptional attenuator common domain protein; COG: COG1316 Transcriptional regulator; Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.508
EDS75091.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.479
EDS73951.1
Ribonuclease BN-like family protein; KEGG: cno:NT01CX_1516 1.1e-15 ribonuclease BN, putative; COG: COG1295 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.470
EDS73958.1
Cell envelope-like function transcriptional attenuator common domain protein; COG: COG1316 Transcriptional regulator; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.461
EDS74245.1
Hypothetical protein; COG: NOG18028 non supervised orthologous group.
  
     0.450
EDS73959.1
Cell envelope-like function transcriptional attenuator common domain protein; COG: COG1316 Transcriptional regulator; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.426
EDS74070.1
Cell envelope-like function transcriptional attenuator common domain protein; COG: COG1316 Transcriptional regulator; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.400
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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