STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73966.1Polysaccharide deacetylase; KEGG: spd:SPD_1309 8.9e-37 pgdA; peptidoglycan GlcNAc deacetylase K01463; COG: COG0726 Predicted xylanase/chitin deacetylase; Psort location: Cytoplasmic, score: 9.65. (405 aa)    
Predicted Functional Partners:
EDS75646.1
Hypothetical protein; KEGG: cpr:CPR_0949 9.9e-09 chitinase B K01183; COG: COG3469 Chitinase.
    
 0.524
EDS73968.1
Methyltransferase small domain protein; KEGG: mmy:MSC_0044 4.3e-60 methyltransferase K00599; COG: COG4123 Predicted O-methyltransferase; Psort location: Cytoplasmic, score: 8.87; Belongs to the methyltransferase superfamily.
       0.494
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.485
EDS73969.1
PSP1 C-terminal domain protein; COG: COG1774 Uncharacterized homolog of PSP1; Psort location: Cytoplasmic, score: 8.87.
       0.476
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.471
EDS73970.1
KEGG: btl:BALH_0027 5.9e-40 holB; DNA polymerase III, delta prime subunit K00961; COG: COG0470 ATPase involved in DNA replication; Psort location: CytoplasmicMembrane, score: 7.80.
       0.468
EDS73965.1
RelA/SpoT domain protein; KEGG: lpl:lp_0293 1.2e-34 GTP pyrophosphokinase (putative) K00951; COG: COG2357 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
       0.418
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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