STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74056.1Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: cpf:CPF_1474 0. lacZ; beta-galactosidase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase; Psort location: Extracellular, score: 8.07; Belongs to the glycosyl hydrolase 2 family. (1646 aa)    
Predicted Functional Partners:
EDS73904.1
Glycosyl hydrolase, family 88; COG: COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
 
  
  0.896
EDS74317.1
Hypothetical protein; COG: NOG23360 non supervised orthologous group.
 
  
 0.824
EDS74318.1
Hypothetical protein; COG: NOG23360 non supervised orthologous group.
 
  
 0.814
EDS75323.1
LPXTG-motif cell wall anchor domain protein; KEGG: cpf:CPF_0184 6.6e-07 nagH; hyaluronidase K01197; COG: NOG38526 non supervised orthologous group; Psort location: Extracellular, score: 9.55.
 
0.808
EDS75974.1
Hypothetical protein; KEGG: cpe:CPE1876 2.3e-61 alpha-L-fucosidase K01206; COG: COG3669 Alpha-L-fucosidase; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.775
galE
KEGG: hit:NTHI0471 4.5e-113 galE; UDP-glucose 4-epimerase K01784; COG: COG1087 UDP-glucose 4-epimerase; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.753
EDS75975.1
Hypothetical protein; KEGG: cpr:CPR_1843 3.5e-21 FucA K01206; COG: COG3669 Alpha-L-fucosidase.
 
   
 0.743
nagJ
O-GlcNAcase NagJ; KEGG: cpe:CPE0191 4.1e-65 nagH; hyaluronoglucosaminidase K01197; COG: NOG11197 non supervised orthologous group; Psort location: Cellwall, score: 9.49.
 0.728
pfkB
1-phosphofructokinase; KEGG: cno:NT01CX_1725 1.1e-79 1-phosphofructokinase K00882; COG: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Psort location: Cytoplasmic, score: 8.87; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.721
EDS75259.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: rso:RSc0215 1.7e-33 RS00647; short chain dehydrogenase; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
 0.705
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.