STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srtBSortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87. (268 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.777
EDS74070.1
Cell envelope-like function transcriptional attenuator common domain protein; COG: COG1316 Transcriptional regulator; Psort location: CytoplasmicMembrane, score: 7.63.
 
   
 0.585
EDS74067.1
PAP2 family protein; KEGG: spk:MGAS9429_Spy1565 1.1e-17 phosphatidylglycerophosphatase B K01094; COG: COG0671 Membrane-associated phospholipid phosphatase; Psort location: CytoplasmicMembrane, score: 9.26.
       0.500
EDS74066.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
     
 0.494
EDS75506.1
Efflux ABC transporter, permease protein; KEGG: cal:orf19.2410 6.5e-06 IMH1; involved in vesicular transport K01553; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
   
 0.490
EDS75733.1
LPXTG-motif cell wall anchor domain protein; KEGG: chu:CHU_3450 0.00077 CHU large protein; uncharacterized K01238; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 8.99.
 
 
   0.488
EDS75301.1
COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.94.
 
 
   0.435
EDS75651.1
Glycosyl hydrolase family 25; KEGG: spd:SPD_1403 4.0e-13 lytC; 1,4-beta-N-acetylmuramidase, putative K01227; COG: COG1388 FOG: LysM repeat.
  
     0.410
isdE
Heme ABC transporter, heme-binding protein isdE; COG: COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
  
 0.410
EDS74646.1
Periplasmic binding protein; COG: COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
  
 0.410
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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