STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufCKEGG: ava:Ava_0425 9.2e-58 sufC; FeS assembly ATPase SufC K09013; COG: COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Psort location: CytoplasmicMembrane, score:9.49. (273 aa)    
Predicted Functional Partners:
sufB
FeS assembly protein SufB; COG: COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; Psort location: Cytoplasmic, score:8.87.
 
 0.999
sufS
Cysteine desulfurase, SufS subfamily; KEGG: bce:BC4981 3.0e-91 cysteine desulfhydrase K01763; COG: COG0520 Selenocysteine lyase; Psort location: Cytoplasmic, score:8.87.
  
 0.997
EDP12387.1
SufB/sufD domain protein; COG: COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; Psort location: Cytoplasmic, score:8.87.
 
 
 0.997
EDP12385.1
SUF system FeS assembly protein, NifU family; COG: COG0822 NifU homolog involved in Fe-S cluster formation; Psort location: Cytoplasmic, score:8.87.
 
  
 0.952
EDP12349.1
SufB/sufD domain protein; COG: COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; Psort location: Cytoplasmic, score:8.87.
 
 
 0.945
EDP12383.1
KEGG: spr:spr1905 8.0e-20 5-formyltetrahydrofolate cyclo-ligase family protein K01934; COG: COG0212 5-formyltetrahydrofolate cyclo-ligase; Psort location: Cytoplasmic, score:8.87.
       0.816
EDP11934.1
Hypothetical protein; COG: COG0822 NifU homolog involved in Fe-S cluster formation; Psort location: Cytoplasmic, score:8.87.
  
  
 0.679
EDP12389.1
PPIC-type PPIASE domain protein; KEGG: sha:SH1121 5.5e-21 prsA; peptidyl-prolyl cis/trans isomerase K01802; COG: COG0760 Parvulin-like peptidyl-prolyl isomerase.
       0.535
EDP12390.1
Hypothetical protein; KEGG: bar:GBAA1041 2.0e-11 prsA-1; protein export protein prsA K07533; COG: COG0760 Parvulin-like peptidyl-prolyl isomerase.
       0.496
EDP12382.1
LPXTG-motif cell wall anchor domain protein; Psort location: Cellwall, score:9.98.
       0.411
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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