STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12337.1Smr domain protein; KEGG: sth:STH1115 0.0037 mutS2; DNA mismatch repair protein K07456; Psort location: Cytoplasmic, score:8.87. (77 aa)    
Predicted Functional Partners:
EDP12335.1
Hypothetical protein; Psort location: Extracellular, score:8.82.
       0.773
EDP12338.1
Tex-like protein N-terminal domain protein; KEGG: ava:Ava_1534 2.0e-140 RNA binding S1; COG: COG2183 Transcriptional accessory protein; Psort location: Cytoplasmic, score:8.87.
       0.723
EDP12336.1
Pentapeptide repeat protein; KEGG: bce:BC2348 1.9e-05 acetyltransferase K00680; COG: COG1357 Uncharacterized low-complexity proteins; Psort location: Cytoplasmic, score:8.87.
       0.572
EDP12339.1
Transketolase, thiamine diphosphate binding domain protein; KEGG: cno:NT01CX_1267 3.4e-92 transketolase, N-terminal subunit K00615; COG: COG3959 Transketolase, N-terminal subunit; Psort location: Cytoplasmic, score:8.87.
       0.529
EDP12340.1
Transketolase, pyridine binding domain protein; KEGG: cno:NT01CX_1268 2.8e-104 transketolase, C-terminal subunit K00615; COG: COG3958 Transketolase, C-terminal subunit.
       0.529
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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