STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12205.1Hypothetical protein; Psort location: Cytoplasmic, score:8.87. (112 aa)    
Predicted Functional Partners:
EDP12204.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
 
   
 0.890
EDP12211.1
Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score:8.87.
 
    0.838
EDP12203.1
Helicase C-terminal domain protein; KEGG: chu:CHU_1468 2.0e-12 dpn; possible adenine-specific DNA methylase K00599; COG: COG4646 DNA methylase; Psort location: Extracellular, score:7.50.
 
   
 0.829
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.803
EDP12156.1
Hypothetical protein; COG: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
 
 0.798
EDP10378.1
Hypothetical protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score:8.87.
 
    0.779
EDP11866.1
Hypothetical protein.
  
     0.732
EDP11068.1
Hypothetical protein.
  
     0.730
EDP12304.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
 
     0.721
EDP11077.1
Hypothetical protein; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Cytoplasmic, score:8.87.
 
     0.714
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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