STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12248.1Hypothetical protein; KEGG: bce:BC0399 4.5e-81 oxidoreductase; COG: COG0723 Rieske Fe-S protein. (504 aa)    
Predicted Functional Partners:
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score:8.87.
  
 
 0.999
EDP11348.1
Peptidase, M16 family; KEGG: bcz:BCZK3546 1.3e-67 insulysin, peptidase family M16 (insulinase) K01408; COG: COG0612 Predicted Zn-dependent peptidases; Psort location: Cytoplasmic, score:8.87.
   
 0.996
EDP11349.1
Peptidase M16 inactive domain protein; KEGG: lwe:lwe1408 4.9e-52 zinc metallopeptidase, putative K01423; COG: COG0612 Predicted Zn-dependent peptidases; Psort location: Cytoplasmic, score:8.87.
   
 0.996
EDP10527.1
KEGG: tde:TDE2512 2.7e-131 aldehyde dehydrogenase (NADP) family protein K00128; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score:9.98.
 
 0.974
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 
 0.951
EDP12329.1
Aminotransferase, class I/II; KEGG: bce:BC2896 2.8e-95 aspartate aminotransferase; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score:8.87.
  
 0.910
EDP10843.1
Hypothetical protein; COG: NOG26052 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
  
 0.910
EDP10147.1
Aminotransferase, class I/II; KEGG: cpe:CPE0711 1.6e-117 aspC; aspartate aminotransferase; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score:8.87.
  
 0.910
EDP10568.1
KEGG: cno:NT01CX_0234 1.2e-112 citrate synthase I K01647; COG: COG0372 Citrate synthase; Psort location: Cytoplasmic, score:9.98.
  
 0.901
EDP10813.1
Trypsin; KEGG: tte:TTE2568 4.1e-64 degQ2; trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain; COG: COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
 0.882
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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