STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12256.1MBOAT family protein; KEGG: pen:PSEEN4543 6.2e-68 algI; alginate O-acetylation protein AlgI K00680; COG: COG1696 Predicted membrane protein involved in D-alanine export; Psort location: CytoplasmicMembrane, score:9.99; Belongs to the membrane-bound acyltransferase family. (464 aa)    
Predicted Functional Partners:
EDP12264.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
 
     0.713
EDP12257.1
Hypothetical protein; KEGG: bta:282514 0.0030 PAFAH1B2; platelet-activating factor acetylhydrolase, isoform Ib, beta subunit (30kD) K01062; COG: COG2755 Lysophospholipase L1 and related esterases.
 
    0.707
EDP12255.1
Hypothetical protein.
       0.697
EDP12254.1
Glycosyl hydrolase family 20, catalytic domain protein; KEGG: spn:SP_0057 4.8e-109 beta-N-acetylhexosaminidase K01207; COG: COG3525 N-acetyl-beta-hexosaminidase; Psort location: Cytoplasmic, score:8.87.
       0.558
EDP12258.1
Sigma-70 region 2; KEGG: btl:BALH_3229 1.5e-16 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.87.
       0.484
EDP12259.1
anti-sigma-V factor RsiV domain protein; COG: NOG09584 non supervised orthologous group.
       0.483
EDP12263.1
MBOAT family protein; KEGG: pen:PSEEN4543 8.9e-76 algI; alginate O-acetylation protein AlgI K00680; COG: COG1696 Predicted membrane protein involved in D-alanine export; Psort location: CytoplasmicMembrane, score:9.99; Belongs to the membrane-bound acyltransferase family.
 
    
0.436
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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