STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12264.1Hypothetical protein; Psort location: Cytoplasmic, score:8.87. (364 aa)    
Predicted Functional Partners:
EDP12263.1
MBOAT family protein; KEGG: pen:PSEEN4543 8.9e-76 algI; alginate O-acetylation protein AlgI K00680; COG: COG1696 Predicted membrane protein involved in D-alanine export; Psort location: CytoplasmicMembrane, score:9.99; Belongs to the membrane-bound acyltransferase family.
 
     0.898
EDP12262.1
Hypothetical protein.
       0.740
EDP12260.1
Sigma-70 region 2; KEGG: btl:BALH_3229 3.1e-11 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.87.
       0.738
EDP12261.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.737
EDP12256.1
MBOAT family protein; KEGG: pen:PSEEN4543 6.2e-68 algI; alginate O-acetylation protein AlgI K00680; COG: COG1696 Predicted membrane protein involved in D-alanine export; Psort location: CytoplasmicMembrane, score:9.99; Belongs to the membrane-bound acyltransferase family.
 
     0.713
EDP12257.1
Hypothetical protein; KEGG: bta:282514 0.0030 PAFAH1B2; platelet-activating factor acetylhydrolase, isoform Ib, beta subunit (30kD) K01062; COG: COG2755 Lysophospholipase L1 and related esterases.
 
    0.655
EDP12258.1
Sigma-70 region 2; KEGG: btl:BALH_3229 1.5e-16 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.87.
 
     0.603
EDP12259.1
anti-sigma-V factor RsiV domain protein; COG: NOG09584 non supervised orthologous group.
 
     0.597
EDP10754.1
Hypothetical protein; KEGG: bcz:BCZK2057 0.00049 macrolide efflux protein K00953; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:9.99.
  
   
 0.549
EDP10753.1
Tetratricopeptide repeat protein; KEGG: bha:BH4014 0.00041 response regulator aspartate phosphatase K06365; COG: COG0457 FOG: TPR repeat; Psort location: Cytoplasmic, score:8.87.
  
    0.486
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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