STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12290.1Leucine Rich Repeat protein; KEGG: ctc:CTC00520 6.0e-20 cwp66 homolog/N-acetylmuramoyl-L-alanine amidase K01446; COG: COG4886 Leucine-rich repeat (LRR) protein; Psort location: Extracellular, score:7.62. (481 aa)    
Predicted Functional Partners:
EDP12289.1
Hypothetical protein.
       0.651
EDP11727.1
LytTr DNA-binding domain protein; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score:8.87.
  
    0.643
EDP10982.1
COG: COG4495 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.87.
  
    0.518
EDP10836.1
Transcriptional regulator, BlaI/MecI/CopY family; KEGG: bcz:BCZK0993 0.0058 blaI; beta-lactamase (penicillinase) repressor K01467; Psort location: Cytoplasmic, score:8.87.
    
  0.498
EDP10625.1
Acyltransferase; COG: NOG11518 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.475
EDP12288.1
Cold-shock DNA-binding domain protein; COG: COG1278 Cold shock proteins; Psort location: Cytoplasmic, score:9.98.
       0.468
EDP10837.1
Peptidase, M56 family; COG: COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component; Psort location: CytoplasmicMembrane, score:7.80.
  
     0.461
EDP11435.1
NlpC/P60 family protein; KEGG: smu:SMU.910 7.2e-15 gtfD; glucosyltransferase-S K00689; COG: COG5263 FOG: Glucan-binding domain (YG repeat); Psort location: Extracellular, score:9.55.
  
     0.460
EDP12162.1
COG: COG5341 Uncharacterized protein conserved in bacteria.
  
    0.443
EDP10472.1
Ankyrin repeat protein; KEGG: xla:444232 9.8e-20 MGC80792; MGC80792 protein K01932; COG: COG0666 FOG: Ankyrin repeat; Psort location: Cytoplasmic, score:8.87.
 
   
 0.443
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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