STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12119.1Putative transposase, IS4 family; COG: COG5421 Transposase; Psort location: Cytoplasmic, score:8.87. (562 aa)    
Predicted Functional Partners:
EDP12296.1
Hypothetical protein.
  
     0.765
EDP11579.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 2.8e-175 beta-N-acetylhexosaminidase K01207; COG: COG3525 N-acetyl-beta-hexosaminidase; Psort location: Extracellular, score:8.07.
  
     0.537
EDP12120.1
Hypothetical protein.
       0.515
EDP12089.1
Hypothetical protein; COG: COG1618 Predicted nucleotide kinase; Psort location: Cytoplasmic, score:8.87.
  
     0.482
EDP10338.1
Transposase, IS4 family; KEGG: fnu:FN1041 0.0014 acetyltransferase K00680; COG: COG3385 FOG: Transposase and inactivated derivatives.
  
     0.439
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
 
     0.410
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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