STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12153.1Thermophilic metalloprotease (M29); KEGG: cpr:CPR_1965 6.6e-96 aminopeptidase K01269; COG: COG2309 Leucyl aminopeptidase (aminopeptidase T); Psort location: Cytoplasmic, score:8.87. (412 aa)    
Predicted Functional Partners:
EDP12154.1
Hypothetical protein; Psort location: Extracellular, score:8.82.
       0.773
EDP12152.1
ROK family protein; KEGG: bha:BH0797 2.8e-49 glucose kinase K00845; COG: COG1940 Transcriptional regulator/sugar kinase; Psort location: Cytoplasmic, score:9.98.
       0.748
EDP12284.1
Hydrolase, alpha/beta domain protein; KEGG: mtu:Rv2715 3.0e-19 possible hydrolase; COG: COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Psort location: Cytoplasmic, score:8.87.
    
 0.559
EDP12151.1
KEGG: cpr:CPR_0968 0.00017 prtP; cell wall-associated serine proteinase, lactocepin precursor K01361; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score:9.26.
       0.476
thrS
threonine--tRNA ligase; KEGG: tte:TTE1713 8.7e-181 thrS; threonyl-tRNA synthetase K01868; COG: COG0441 Threonyl-tRNA synthetase; Psort location: Cytoplasmic, score:10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.421
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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