STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12156.1Hypothetical protein; COG: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. (304 aa)    
Predicted Functional Partners:
EDP10702.1
KEGG: rha:RHA1_ro08170 1.3e-08 ABC transporter, permease component; COG: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Psort location: CytoplasmicMembrane, score:9.97.
 
 
 0.959
thrS
threonine--tRNA ligase; KEGG: tte:TTE1713 8.7e-181 thrS; threonyl-tRNA synthetase K01868; COG: COG0441 Threonyl-tRNA synthetase; Psort location: Cytoplasmic, score:10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.804
EDP12205.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
  
 
 0.798
EDP10373.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
  
 
 0.798
EDP12157.1
Dinitrogenase iron-molybdenum cofactor; COG: COG1433 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.87.
  
  
 0.789
EDP10633.1
Hypothetical protein; KEGG: eci:UTI89_C2121 4.0e-07 fliY; cystine-binding periplasmic protein precursor K02030:K02424; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
 
 0.704
EDP12283.1
KEGG: bli:BL00749 1.7e-49 cssS; two-component sensor histidine kinase K07650; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score:9.36.
 
  
 0.677
EDP11057.1
Hypothetical protein; KEGG: fnu:FN0099 0.0012 inorganic pyrophosphatase K01507; COG: NOG16853 non supervised orthologous group.
 
   
 0.602
EDP10690.1
Hypothetical protein; COG: COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.583
EDP12365.1
COG: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
  
 
  0.558
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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