STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12162.1COG: COG5341 Uncharacterized protein conserved in bacteria. (129 aa)    
Predicted Functional Partners:
EDP12163.1
KEGG: ctc:CTC01025 3.5e-19 heptaprenyl diphosphate synthase component I K00805; COG: COG4769 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:9.99.
 
    0.978
EDP12164.1
Conserved hypothetical protein TIGR03905; COG: NOG17478 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
       0.733
dut
dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
       0.597
EDP11204.1
Polyprenyl synthetase; KEGG: bli:BL01524 6.3e-59 ispAB; polyprenyl synthetase,polyprenyl synthetase K00795; COG: COG0142 Geranylgeranyl pyrophosphate synthase; Psort location: Cytoplasmic, score:9.98.
  
 
  0.571
EDP12161.1
Transcriptional regulator, LacI family; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score:8.87.
       0.541
EDP12166.1
Hypothetical protein.
       0.523
EDP12160.1
Cof-like hydrolase; KEGG: ecc:c0907 4.5e-17 ybiV; putative sugar phosphatase K07757; COG: COG0561 Predicted hydrolases of the HAD superfamily; Psort location: Cytoplasmic, score:8.87.
  
    0.463
EDP12167.1
Hypothetical protein.
       0.457
EDP10772.1
FMN-binding domain protein; COG: COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG.
 
     0.444
EDP12290.1
Leucine Rich Repeat protein; KEGG: ctc:CTC00520 6.0e-20 cwp66 homolog/N-acetylmuramoyl-L-alanine amidase K01446; COG: COG4886 Leucine-rich repeat (LRR) protein; Psort location: Extracellular, score:7.62.
  
    0.443
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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