STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12069.1KEGG: cch:Cag_1883 4.3e-92 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.49. (332 aa)    
Predicted Functional Partners:
EDP12067.1
ABC transporter, permease protein; KEGG: syf:Synpcc7942_2454 6.7e-55 adenine phosphoribosyltransferase K00759; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 0.999
EDP12068.1
ABC transporter, permease protein; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 
 0.999
EDP12066.1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 5.9e-09 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 
 0.967
EDP12070.1
ABC transporter, ATP-binding protein; KEGG: reh:H16_B1124 4.2e-85 ABC-type transporter; COG: COG4608 ABC-type oligopeptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.49.
 
  
 
0.906
EDP12217.1
ABC transporter, ATP-binding protein; KEGG: tte:TTE0204 3.6e-33 mglA; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1122 ABC-type cobalt transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.49.
  
 
0.830
EDP10088.1
KEGG: bcl:ABC3649 1.8e-29 Fe3+ ABC transporter ATP-binding protein K02010; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.49.
   
 
0.801
bcrA
KEGG: fal:FRAAL3681 5.5e-44 putative ABC transporter ATP-binding protein; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.49.
   
 
0.782
EDP12071.1
Hypothetical protein.
       0.773
EDP11423.1
ABC transporter, ATP-binding protein; KEGG: pen:PSEEN1283 1.5e-64 livG; branched-chain amino acid ABC transporter, ATP-binding protein; COG: COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Psort location: CytoplasmicMembrane, score:9.49.
   
0.745
EDP10644.1
KEGG: fal:FRAAL1877 1.7e-33 putative ABC transporter ATP-binding protein; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.49.
   
 
0.698
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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