STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpXCOG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score:8.87. (618 aa)    
Predicted Functional Partners:
EDP11823.1
Plasmid recombination enzyme; COG: NOG17369 non supervised orthologous group.
 
     0.887
EDP11822.1
ParB-like protein; KEGG: pub:SAR11_0354 2.2e-10 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.87; Belongs to the ParB family.
 
     0.869
EDP11824.1
Hypothetical protein; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
 
     0.827
EDP11821.1
COG: COG4443 Uncharacterized protein conserved in bacteria.
 
     0.767
EDP11832.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
 
     0.708
EDP11828.1
Sigma-70, region 4; Psort location: Cytoplasmic, score:8.87.
  
     0.705
EDP11310.1
COG: COG3728 Phage terminase, small subunit; Psort location: Cytoplasmic, score:8.87.
  
    0.626
EDP11820.1
Hypothetical protein.
       0.625
EDP12103.1
Sigma-70, region 4; Psort location: Cytoplasmic, score:8.87.
  
     0.463
EDP11865.1
TraG/TraD family protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score:8.87.
 
    0.450
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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