STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11840.1Hypothetical protein; KEGG: sfl:SF1683 0.0031 ydhO; putative lipoprotein K01183; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (578 aa)    
Predicted Functional Partners:
EDP11838.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
 
     0.929
EDP11839.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
 
     0.928
EDP11844.1
Hypothetical protein; COG: NOG33085 non supervised orthologous group.
 
     0.876
EDP11835.1
CHC2 zinc finger domain protein; KEGG: dde:Dde_2053 7.7e-10 DNA primase K02316; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
 
     0.817
EDP12310.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
 
     0.784
EDP12311.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
 
     0.783
EDP11841.1
Hypothetical protein.
       0.782
EDP11074.1
Hypothetical protein; COG: NOG33085 non supervised orthologous group.
 
     0.764
EDP11843.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score:8.87.
  
 0.727
EDP12305.1
CHC2 zinc finger domain protein; KEGG: ilo:IL2201 1.5e-11 dnaG; DNA primase K02316; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
 
     0.708
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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