STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11903.1Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: ypk:y1886 5.0e-43 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score:9.98. (259 aa)    
Predicted Functional Partners:
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score:8.87.
   
 0.990
rpiB
KEGG: gka:GK3371 1.5e-43 ribose 5-phosphate isomerase K01808; COG: COG0698 Ribose 5-phosphate isomerase RpiB; Psort location: Cytoplasmic, score:8.87.
  
 
 0.925
ptbA-5
PTS system, glucose subfamily, IIA component; KEGG: lac:LBA0401 4.1e-29 scrA; sucrose PTS II ABC K02808:K02809:K02810; COG: COG2190 Phosphotransferase system IIA components; Psort location: Cytoplasmic, score:9.98.
     
 0.895
EDP10189.1
Phosphotransferase system, EIIC; KEGG: btk:BT9727_0877 5.2e-80 bglP; probable PTS system, beta-glucoside-specific enzyme II, ABC component K02755:K02756:K02757; COG: COG2190 Phosphotransferase system IIA components; Psort location: CytoplasmicMembrane, score:10.00.
     
 0.895
EDP10472.1
Ankyrin repeat protein; KEGG: xla:444232 9.8e-20 MGC80792; MGC80792 protein K01932; COG: COG0666 FOG: Ankyrin repeat; Psort location: Cytoplasmic, score:8.87.
   
 0.892
rpe
KEGG: cdi:DIP1320 2.2e-49 rpe; ribulose-phosphate 3-epimerase K01783; COG: COG0036 Pentose-5-phosphate-3-epimerase; Psort location: Cytoplasmic, score:8.87.
  
 
 0.881
ppiB
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.828
EDP11022.1
Rubredoxin; KEGG: fnu:FN1424 2.4e-265 acyl-CoA dehydrogenase, short-chain specific K00248; COG: COG2025 Electron transfer flavoprotein, alpha subunit; Psort location: Cytoplasmic, score:9.98.
  
 0.825
EDP10556.1
STAS domain protein; KEGG: eci:UTI89_C1400 1.0e-65 ychM; putative sulfate transporter YchM K03321; COG: COG0659 Sulfate permease and related transporters (MFS superfamily); Psort location: CytoplasmicMembrane, score:9.99.
  
 
 0.808
EDP11465.1
KEGG: lwe:lwe2117 1.6e-133 PTS system, galactitol-specific, IIC component, putative K00890; COG: COG3775 Phosphotransferase system, galactitol-specific IIC component; Psort location: CytoplasmicMembrane, score:10.00.
  
 
  0.793
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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