STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11909.13H domain protein; COG: COG1827 Predicted small molecule binding protein (contains 3H domain); Psort location: Cytoplasmic, score:8.87. (171 aa)    
Predicted Functional Partners:
EDP11656.1
Acetyltransferase, GNAT family; KEGG: lma:LmjF28.3005 3.1e-05 glucose 6-phosphate N-acetyltransferase, putative K00621; COG: COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; Psort location: Cytoplasmic, score:8.87.
 
      0.842
EDP11911.1
Cof-like hydrolase; KEGG: btl:BALH_4896 2.5e-32 hydrolase, haloacid dehalogenase-like family K01564; COG: COG0561 Predicted hydrolases of the HAD superfamily; Psort location: Cytoplasmic, score:8.87.
       0.773
EDP11907.1
Hypothetical protein; COG: NOG13357 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.99.
 
   
 0.594
EDP11910.1
Hypothetical protein; Psort location: Extracellular, score:8.82.
       0.572
EDP11912.1
Hypothetical protein; KEGG: reh:H16_A2563 8.7e-05 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family.
       0.414
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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