STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
licCLicC protein; KEGG: fnu:FN1237 3.7e-23 choline kinase K00866:K00968; COG: COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes; Psort location: Cytoplasmic, score:8.87. (253 aa)    
Predicted Functional Partners:
EDP10676.1
Phosphotransferase enzyme family; KEGG: fnu:FN1237 2.3e-24 choline kinase K00866:K00968; COG: COG0510 Predicted choline kinase involved in LPS biosynthesis; Psort location: Cytoplasmic, score:8.87.
   
 0.800
cspA
COG: COG1278 Cold shock proteins; Psort location: Cytoplasmic, score:9.98.
       0.773
EDP11962.1
Hypothetical protein; COG: COG1040 Predicted amidophosphoribosyltransferases.
       0.773
EDP11963.1
Helicase C-terminal domain protein; KEGG: ljo:LJ1530 7.4e-10 ATP-dependent DNA helicase RecG K03655; COG: COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); Psort location: Cytoplasmic, score:8.87.
       0.773
folD
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
   
 
  0.766
EDP12061.1
KEGG: cpf:CPF_0917 1.1e-24 LicD family protein K07271; COG: COG3475 LPS biosynthesis protein.
 
   
 0.680
EDP11960.1
Cold-shock DNA-binding domain protein; COG: COG1278 Cold shock proteins; Psort location: Cytoplasmic, score:9.98.
       0.533
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
  
  
  0.523
EDP11965.1
Hypothetical protein.
       0.511
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.