STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11980.1Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: sha:SH0186 8.7e-46 hypothetical protein K07260; COG: COG1876 D-alanyl-D-alanine carboxypeptidase. (363 aa)    
Predicted Functional Partners:
EDP12190.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: btl:BALH_2271 2.3e-22 D-alanyl-D-alanine carboxypeptidase family protein K01286; COG: COG1876 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score:9.36.
  
  
 
0.812
EDP11002.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: gsu:GSU3075 2.5e-54 penicillin-binding protein K03587; COG: COG0768 Cell division protein FtsI/penicillin-binding protein 2; Psort location: CytoplasmicMembrane, score:9.82.
     
 0.767
EDP11098.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bcz:BCZK1351 1.9e-57 dacB; D-alanyl-D-alanine carboxypeptidase K01286; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score:8.87; Belongs to the peptidase S11 family.
     
 0.751
dacF
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bli:BL00775 3.5e-81 dacF; penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) K07258; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score:8.87; Belongs to the peptidase S11 family.
    
 0.749
EDP11979.1
O-methyltransferase; KEGG: btk:BT9727_4116 4.0e-41 O-methyltransferase; possible caffeoyl-CoA O-methyltransferase K00599; COG: COG4122 Predicted O-methyltransferase; Psort location: Cytoplasmic, score:8.87.
       0.675
EDP11112.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: btl:BALH_4098 8.0e-36 dacF; D-alanyl-D-alanine carboxypeptidase K01286; COG: COG1876 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score:9.36.
  
  
 
0.669
EDP11364.1
Transglycosylase; KEGG: spn:SP_0369 1.3e-63 penicillin-binding protein 1A K05366; COG: COG0744 Membrane carboxypeptidase (penicillin-binding protein); Psort location: Extracellular, score:9.55.
  
  
 0.564
EDP11135.1
KEGG: bcz:BCZK2802 1.5e-80 pbp2; penicillin-binding protein 2 K05364; COG: COG0768 Cell division protein FtsI/penicillin-binding protein 2; Psort location: CytoplasmicMembrane, score:9.82.
     
 0.512
rplQ
COG: COG0203 Ribosomal protein L17; Psort location: Cytoplasmic, score:8.87.
       0.510
EDP11978.1
Hypothetical protein; COG: KOG0946 ER-Golgi vesicle-tethering protein p115; Psort location: Cytoplasmic, score:8.87.
       0.501
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.