STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnW2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. (364 aa)    
Predicted Functional Partners:
phnX
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
  
 0.999
EDP12018.1
Hypothetical protein; COG: COG1840 ABC-type Fe3+ transport system, periplasmic component.
 
  
 0.944
EDP12019.1
KEGG: ava:Ava_0243 5.2e-06 molybdate ABC transporter, permease protein K02018; COG: COG1178 ABC-type Fe3+ transport system, permease component; Psort location: CytoplasmicMembrane, score:9.99.
 
     0.941
ilvA
KEGG: chy:CHY_2459 5.4e-101 ilvA2; threonine dehydratase K01754; COG: COG1171 Threonine dehydratase; Psort location: Cytoplasmic, score:8.87.
  
 0.938
EDP10813.1
Trypsin; KEGG: tte:TTE2568 4.1e-64 degQ2; trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain; COG: COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
    
  0.908
EDP11028.1
Cupin domain protein; KEGG: psp:PSPPH_2917 1.5e-09 DNA-binding protein K00517; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.87.
    
  0.849
EDP12020.1
KEGG: mcp:MCAP_0202 1.3e-58 spermidine/putrescine ABC transporter, ATP-binding protein K02052; COG: COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Psort location: CytoplasmicMembrane, score:9.49.
 
     0.842
EDP11056.1
Dehydrogenase, FMN-dependent; KEGG: lil:LA1488 4.9e-52 L-lactate dehydrogenase K00016; COG: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; Psort location: Cytoplasmic, score:8.87.
  
 0.767
EDP12248.1
Hypothetical protein; KEGG: bce:BC0399 4.5e-81 oxidoreductase; COG: COG0723 Rieske Fe-S protein.
  
 
 0.734
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score:8.87.
  
 
 0.733
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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