STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11516.1DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score:9.99. (313 aa)    
Predicted Functional Partners:
EDP11930.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.0097 dam; adenine-specific DNA methyltransferase K06223; COG: NOG16841 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.97.
  
     0.763
EDP12317.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score:9.97.
  
     0.744
EDP11357.1
Competence/damage-inducible domain protein CinA; COG: COG1546 Uncharacterized protein (competence- and mitomycin-induced); Belongs to the CinA family.
    
 0.682
EDP11664.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
  
 
 0.658
EDP10454.1
Hypothetical protein.
  
 
 0.658
nadE
NAD+ synthase; KEGG: tte:TTE0640 9.4e-49 nadE; NAD synthase K01950; COG: COG0388 Predicted amidohydrolase; Belongs to the NAD synthetase family.
    
 0.656
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score:8.87.
  
 
 0.579
EDP10383.1
Hypothetical protein; COG: COG3177 Uncharacterized conserved protein.
  
 0.560
EDP10899.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 9.9e-07 dam; adenine-specific DNA methyltransferase K06223; COG: COG2932 Predicted transcriptional regulator; Psort location: Cytoplasmic, score:8.87.
  
     0.516
EDP11515.1
Transposase, IS605 OrfB family; KEGG: sso:SSO9221 0.0030 rpoM-2; DNA-directed RNA polymerase subunit M K03057; COG: COG0675 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score:8.87.
       0.451
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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