STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11602.1Hypothetical protein; KEGG: twh:TWT520 0.00074 DNA helicase K01529; COG: COG3857 ATP-dependent nuclease, subunit B; Psort location: Cytoplasmic, score:8.87. (889 aa)    
Predicted Functional Partners:
EDP11603.1
Putative ATP-dependent nuclease subunit A; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation; this subunit has the helicase and 3' -> 5' nuclease activities; Belongs to the helicase family. AddA subfamily.
 
 
 0.999
ezrA
Septation ring formation regulator EzrA; KEGG: fnu:FN0522 4.5e-09 exonuclease SBCC K03546; COG: COG4477 Negative regulator of septation ring formation; Psort location: Cytoplasmic, score:8.87.
  
     0.695
EDP12280.1
YbbR-like protein; COG: COG4856 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.87.
  
    0.657
EDP12380.1
KEGG: bsu:BG13804 2.1e-67 recJ, yrvE; Mg2+-dependent ssDNA specific 5'-3' exonuclease K07462; COG: COG0608 Single-stranded DNA-specific exonuclease; Psort location: Cytoplasmic, score:8.87.
 
   
 0.654
EDP11164.1
Polysaccharide biosynthesis protein; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score:9.99.
  
     0.641
EDP11197.1
Putative stage II sporulation protein M; COG: COG1300 Uncharacterized membrane protein; Psort location: CytoplasmicMembrane, score:10.00.
  
    0.548
EDP10261.1
Hypothetical protein; KEGG: fnu:FN1041 1.2e-22 acetyltransferase K00680; COG: COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases; Psort location: Cytoplasmic, score:8.87.
  
     0.537
EDP10707.1
Hypothetical protein; COG: NOG08846 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
  
     0.519
EDP11214.1
RelA/SpoT domain protein; KEGG: ljo:LJ0823 1.5e-11 hypothetical protein K07816; COG: COG2357 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.87.
  
     0.514
galU
KEGG: cpe:CPE0506 2.4e-91 galF; UTP-glucose-1-phosphate uridylyltransferase K00963; COG: COG1210 UDP-glucose pyrophosphorylase; Psort location: Cytoplasmic, score:8.87.
       0.513
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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