STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11664.1Hypothetical protein; Psort location: Cytoplasmic, score:8.87. (407 aa)    
Predicted Functional Partners:
EDP11597.1
DNA-binding helix-turn-helix protein; COG: COG1476 Predicted transcriptional regulators.
   
 
 0.821
EDP11341.1
DNA-binding helix-turn-helix protein.
   
 
 0.821
EDP10382.1
Hypothetical protein; COG: NOG37851 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
   
 
 0.821
EDP10230.1
DNA-binding helix-turn-helix protein; KEGG: afu:AF2118 0.00026 guaB-2; IMP dehydrogenase K00088; COG: COG1476 Predicted transcriptional regulators.
   
 
 0.821
EDP10270.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 4.0e-05 dam; adenine-specific DNA methyltransferase K06223; COG: COG1476 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.87.
   
 
 0.821
EDP12060.1
DNA-binding helix-turn-helix protein; KEGG: pmu:PM0897 0.0092 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483; Psort location: Cytoplasmic, score:8.87.
 
 
 0.702
EDP12317.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score:9.97.
  
 
 0.658
EDP12222.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 1.1e-05 dam; adenine-specific DNA methyltransferase K06223; COG: NOG36102 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
  
 
 0.658
EDP12102.1
DNA-binding helix-turn-helix protein; KEGG: eba:ebA5278 5.8e-07 bzdR; regulator of the anaerobic catobolism of benzoate BzdR K00891; COG: NOG19742 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
  
 
 0.658
EDP11904.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score:8.87.
  
 
 0.658
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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