STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11735.1Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.97. (98 aa)    
Predicted Functional Partners:
EDP11734.1
ParB-like protein; KEGG: pub:SAR11_0354 5.0e-50 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.87; Belongs to the ParB family.
       0.773
soj
Sporulation initiation inhibitor protein Soj; KEGG: cch:Cag_1803 1.1e-63 ATPase, ParA family K03496; COG: COG1192 ATPases involved in chromosome partitioning.
       0.752
EDP11732.1
ParB-like protein; KEGG: pub:SAR11_0354 6.4e-34 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.87; Belongs to the ParB family.
       0.746
gidB
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.725
ptbA-4
KEGG: sag:SAG0790 3.0e-32 PTS system, beta-glucosides-specific IIABC components K02755:K02756:K02757; COG: COG2190 Phosphotransferase system IIA components; Psort location: Cytoplasmic, score:9.98.
       0.429
EDP11737.1
PRD domain protein; COG: COG3711 Transcriptional antiterminator; Psort location: Cytoplasmic, score:8.87.
       0.423
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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