STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11798.1Transcriptional regulator, PadR family; COG: COG1695 Predicted transcriptional regulators. (184 aa)    
Predicted Functional Partners:
EDP11797.1
Hypothetical protein; COG: NOG10993 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
       0.584
EDP11188.1
Transcriptional regulator, MerR family; KEGG: sce:YBR093C 0.0072 PHO5; Acid phosphatase, repressible K01078; COG: COG0789 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.87.
 
   
 0.548
EDP11799.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.490
EDP11796.1
HAD hydrolase, family IA, variant 3; KEGG: cch:Cag_0071 1.1e-17 beta-phosphoglucomutase hydrolase K01838; COG: COG0637 Predicted phosphatase/phosphohexomutase; Psort location: Cytoplasmic, score:8.87.
  
    0.430
luxS
S-ribosylhomocysteinase LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
     
 0.412
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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