STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11801.1ABC transporter, ATP-binding protein; KEGG: cch:Cag_0251 8.6e-23 ATPase; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.49. (232 aa)    
Predicted Functional Partners:
EDP11210.1
Hypothetical protein; KEGG: spr:spr0464 0.0038 hk13; histidine kinase K07706; COG: NOG23159 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
  
 0.863
EDP10258.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score:9.97.
  
 0.863
EDP11726.1
Hypothetical protein; KEGG: mmy:MSC_0054 0.0019 ptsG; PTS system, glucose-specific IIABC component K02778:K02779; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score:9.99.
  
 0.860
EDP11805.1
KEGG: bcz:BCZK3833 7.1e-12 transcriptional regulator, GntR family; COG: COG1725 Predicted transcriptional regulators.
 
  
 0.857
EDP10645.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score:9.99.
  
 0.789
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.775
EDP11802.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:10.00.
       0.773
EDP11803.1
Hypothetical protein; KEGG cal:orf19.2082 0.0025 Gpi-anchored aspartic protease.
       0.773
EDP11804.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.99.
       0.773
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.764
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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