STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpAScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. (288 aa)    
Predicted Functional Partners:
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
 0.999
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.995
EDP10309.1
Efflux ABC transporter, permease protein; KEGG: cal:orf19.3100 7.7e-06 USO4; coiled-coil protein necessary for protein transport from ER to Golgi K01553; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score:9.82.
  
 
 0.873
EDP10526.1
Hypothetical protein; KEGG: cal:orf19.6294 0.0040 MYO1; class II myosin heavy chain K01553; COG: NOG07592 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
  
 
 0.862
EDP11101.1
Pseudouridylate synthase; KEGG: bld:BLi02462 7.6e-63 rluB; pseudouridine synthase; RBL00848 K06178; COG: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Psort location: Cytoplasmic, score:8.87; Belongs to the pseudouridine synthase RsuA family.
 
  
 0.752
cmk
Cytidylate kinase; KEGG: san:gbs1455 1.1e-54 cytidylate kinase K00945; COG: COG0283 Cytidylate kinase; Psort location: Cytoplasmic, score:8.87.
 
  
 0.746
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
  
 0.635
EDP12380.1
KEGG: bsu:BG13804 2.1e-67 recJ, yrvE; Mg2+-dependent ssDNA specific 5'-3' exonuclease K07462; COG: COG0608 Single-stranded DNA-specific exonuclease; Psort location: Cytoplasmic, score:8.87.
  
    0.620
EDP12402.1
Bacterial peptidase A24, N-terminal domain protein; KEGG: tte:TTE1266 6.1e-38 pppA; leader peptidase (prepilin peptidase) / N-methyltransferase K02654; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score:10.00.
   
    0.598
EDP11098.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bcz:BCZK1351 1.9e-57 dacB; D-alanyl-D-alanine carboxypeptidase K01286; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score:8.87; Belongs to the peptidase S11 family.
  
    0.573
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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