STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11208.15'-nucleotidase; KEGG: dps:DP1354 3.8e-84 similar to 5'-nucleotidase K01081; COG: NOG04570 non supervised orthologous group. (307 aa)    
Predicted Functional Partners:
EDP10096.1
KEGG: lin:lin0179 1.4e-214 similar to inosine monophosphate dehydrogenase K00088; COG: COG0517 FOG: CBS domain; Psort location: Cytoplasmic, score:8.87.
     
  0.953
deoD
KEGG: msy:MS53_0447 1.9e-59 deoD; purine-nucleoside phosphorylase K03784; COG: COG0813 Purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score:8.87.
     
  0.945
tdk
Thymidine kinase; KEGG: bsu:BG10419 6.3e-59 tdk; thymidine kinase K00857; COG: COG1435 Thymidine kinase; Psort location: Cytoplasmic, score:8.87.
    
  0.895
EDP10853.1
Phosphoribulokinase/uridine kinase family protein; KEGG: ctc:CTC00344 2.1e-106 uridine kinase K00876; COG: COG0572 Uridine kinase; Psort location: Cytoplasmic, score:8.87.
    
  0.890
EDP11204.1
Polyprenyl synthetase; KEGG: bli:BL01524 6.3e-59 ispAB; polyprenyl synthetase,polyprenyl synthetase K00795; COG: COG0142 Geranylgeranyl pyrophosphate synthase; Psort location: Cytoplasmic, score:9.98.
       0.763
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.763
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.763
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.763
EDP11202.1
KEGG: cff:CFF8240_1111 3.2e-23 rrmJ; ribosomal RNA large subunit methyltransferase J K00599; COG: COG1189 Predicted rRNA methylase; Psort location: Cytoplasmic, score:8.87.
       0.723
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
       0.722
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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