STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11213.1Hypothetical protein; KEGG: ehi:13.t00009 0.00014 phosphatidylinositol-4-phosphate 5-kinase, putative K00889; COG: NOG14253 non supervised orthologous group. (167 aa)    
Predicted Functional Partners:
EDP10170.1
Peptidase, M23 family; KEGG: ava:Ava_4929 4.2e-05 peptidase M23B K08259; COG: COG0739 Membrane proteins related to metalloendopeptidases; Psort location: Cytoplasmic, score:8.87.
   
 
 0.992
EDP11212.1
Hypothetical protein; Psort location: Extracellular, score:8.82.
       0.752
ribF
Riboflavin biosynthesis protein RibF; KEGG: bha:BH2409 2.3e-52 ribC; riboflavin kinase / FAD synthase K00861:K00953; COG: COG0196 FAD synthase; Psort location: Cytoplasmic, score:8.87; Belongs to the ribF family.
       0.637
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.637
spoIVA
Stage IV sporulation protein A; COG: NOG05962 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
   
  
 0.625
EDP11214.1
RelA/SpoT domain protein; KEGG: ljo:LJ0823 1.5e-11 hypothetical protein K07816; COG: COG2357 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.87.
       0.625
EDP11217.1
PP-loop family protein; KEGG: reh:H16_A0260 1.8e-29 predicted ATPase of the PP-loop superfamily implicated in cell cycle control K01529; COG: COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; Psort location: Cytoplasmic, score:8.87; Belongs to the TtcA family.
       0.442
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.