STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11327.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
EDP11328.1
COG: COG4712 Uncharacterized protein conserved in bacteria.
       0.782
EDP11326.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.773
EDP11329.1
Hypothetical protein.
       0.773
EDP11325.1
DnaD domain protein; COG: COG3935 Putative primosome component and related proteins; Psort location: Cytoplasmic, score:8.87.
       0.754
EDP11320.1
Hypothetical protein.
       0.741
EDP11321.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.741
EDP11322.1
ThiF family protein; KEGG: ech:ECH_1107 0.0023 thiF; adenylyltransferase ThiF; COG: NOG11016 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
       0.741
EDP11323.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.741
EDP11324.1
Hypothetical protein.
       0.741
EDP11319.1
KEGG: shn:Shewana3_3590 1.2e-11 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein.
       0.712
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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