STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11346.1Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Belongs to the 'phage' integrase family. (357 aa)    
Predicted Functional Partners:
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score:8.87.
    
 0.881
EDP11345.1
KEGG: sto:ST0968 0.0090 hypothetical GDP-mannose pyrophosphorylase; Psort location: CytoplasmicMembrane, score:9.75.
       0.773
EDP11962.1
Hypothetical protein; COG: COG1040 Predicted amidophosphoribosyltransferases.
   
    0.579
EDP11344.1
Hypothetical protein; COG: NOG24153 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
       0.529
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
 
  
  0.525
pta
KEGG: spn:SP_1100 3.1e-73 phosphate acetyltransferase K00625; COG: COG0280 Phosphotransacetylase; Psort location: Cytoplasmic, score:8.87.
    
 0.484
pta-2
KEGG: btk:BT9727_5068 2.5e-87 pta; phosphate acetyltransferase K00625; COG: COG0280 Phosphotransacetylase; Psort location: Cytoplasmic, score:8.87.
    
 0.484
EDP11558.1
KEGG: cno:NT01CX_0626 3.6e-56 prephenate dehydrogenase K00210; COG: COG0287 Prephenate dehydrogenase; Psort location: Cytoplasmic, score:8.87.
  
    0.473
EDP12284.1
Hydrolase, alpha/beta domain protein; KEGG: mtu:Rv2715 3.0e-19 possible hydrolase; COG: COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Psort location: Cytoplasmic, score:8.87.
     
 0.470
EDP10701.1
Hypothetical protein; COG: COG2135 Uncharacterized conserved protein; Belongs to the SOS response-associated peptidase family.
   
  
 0.458
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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