STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP11364.1Transglycosylase; KEGG: spn:SP_0369 1.3e-63 penicillin-binding protein 1A K05366; COG: COG0744 Membrane carboxypeptidase (penicillin-binding protein); Psort location: Extracellular, score:9.55. (1054 aa)    
Predicted Functional Partners:
EDP11002.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: gsu:GSU3075 2.5e-54 penicillin-binding protein K03587; COG: COG0768 Cell division protein FtsI/penicillin-binding protein 2; Psort location: CytoplasmicMembrane, score:9.82.
 
 0.976
EDP11360.1
DivIVA domain protein; KEGG: lwe:lwe2040 0.0019 cell division protein DivIVA K01549; COG: COG3599 Cell division initiation protein; Psort location: Cytoplasmic, score:8.87.
 
 
 
 0.925
EDP11003.1
KEGG: tte:TTE1916 1.6e-101 ftsI4; Cell division protein FtsI/penicillin-binding protein 2 K03587; COG: COG0768 Cell division protein FtsI/penicillin-binding protein 2; Psort location: CytoplasmicMembrane, score:9.49.
 
 
 0.879
EDP11135.1
KEGG: bcz:BCZK2802 1.5e-80 pbp2; penicillin-binding protein 2 K05364; COG: COG0768 Cell division protein FtsI/penicillin-binding protein 2; Psort location: CytoplasmicMembrane, score:9.82.
 
 
 0.860
recU
Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.
 
  
 0.849
EDP11434.1
Transglycosylase; KEGG: bha:BH3812 2.5e-103 penicillin-binding protein K05366; COG: COG0744 Membrane carboxypeptidase (penicillin-binding protein); Psort location: Extracellular, score:9.55.
  
  
 
0.848
EDP11112.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: btl:BALH_4098 8.0e-36 dacF; D-alanyl-D-alanine carboxypeptidase K01286; COG: COG1876 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score:9.36.
     
 0.827
EDP12201.1
Hypothetical protein; KEGG: lwe:lwe2040 1.7e-08 cell division protein DivIVA K01549; COG: COG3599 Cell division initiation protein; Psort location: Cytoplasmic, score:8.87.
   
 
 0.825
EDP12190.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: btl:BALH_2271 2.3e-22 D-alanyl-D-alanine carboxypeptidase family protein K01286; COG: COG1876 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score:9.36.
  
  
 0.814
dacF
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bli:BL00775 3.5e-81 dacF; penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) K07258; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score:8.87; Belongs to the peptidase S11 family.
  
 
 0.810
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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