STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10863.1Hypothetical protein; COG: NOG11206 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87. (249 aa)    
Predicted Functional Partners:
EDP10467.1
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
  0.771
EDP10864.1
Hypothetical protein; KEGG sam:MW1110 1.8e-05 recG; ATP-dependent DNA helicase K03655.
       0.654
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score:8.87.
  
  
 0.612
EDP10146.1
Transcriptional regulator, AsnC family; COG: COG1522 Transcriptional regulators; Psort location: Cytoplasmic, score:8.87.
  
 
 0.579
EDP11214.1
RelA/SpoT domain protein; KEGG: ljo:LJ0823 1.5e-11 hypothetical protein K07816; COG: COG2357 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.87.
 
  
  0.566
EDP11925.1
Hydrolase, NUDIX family; KEGG: lsa:LSA1097 8.1e-05 putative ADP-ribose phosphorylase, NUDIX family K01515; COG: COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Psort location: Cytoplasmic, score:8.87.
  
  
  0.520
ndk
KEGG: mst:Msp_0630 2.9e-15 ndk; nucleoside diphosphate kinase K00940; COG: COG0105 Nucleoside diphosphate kinase; Psort location: Cytoplasmic, score:8.87.
     
 0.483
EDP12336.1
Pentapeptide repeat protein; KEGG: bce:BC2348 1.9e-05 acetyltransferase K00680; COG: COG1357 Uncharacterized low-complexity proteins; Psort location: Cytoplasmic, score:8.87.
   
 
  0.481
EDP11629.1
Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score:8.87.
 
   
 0.481
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
    
  0.477
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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