STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rusACrossover junction endodeoxyribonuclease RusA; COG: COG4570 Holliday junction resolvase; Psort location: Cytoplasmic, score:8.87. (143 aa)    
Predicted Functional Partners:
EDP10910.1
Recombinase, phage RecT family; COG: COG3723 Recombinational DNA repair protein (RecE pathway).
 
     0.852
EDP10913.1
Hypothetical protein; KEGG: fnu:FN0522 0.0054 exonuclease SBCC K03546; COG: COG3935 Putative primosome component and related proteins.
 
     0.810
EDP10908.1
YqaJ viral recombinase family protein; COG: COG5377 Phage-related protein, predicted endonuclease.
 
     0.807
EDP10916.1
KEGG: shn:Shewana3_3590 3.9e-11 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein.
       0.783
EDP10911.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.773
EDP10914.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.773
EDP10915.1
Hypothetical protein; COG: NOG14118 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
       0.773
EDP10930.1
Phage regulatory protein, Rha family; COG: COG3645 Uncharacterized phage-encoded protein; Psort location: Cytoplasmic, score:8.87.
 
     0.743
EDP10917.1
Hypothetical protein; KEGG: fnu:FN1793 0.0041 phosphoenolpyruvate-protein phosphotransferase K08484; Psort location: Extracellular, score:8.82.
       0.741
EDP10918.1
Hypothetical protein.
       0.741
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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