STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10403.1Hypothetical protein; KEGG: pca:Pcar_1519 6.9e-37 undecaprenyl-phosphate glucosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score:9.49. (204 aa)    
Predicted Functional Partners:
EDP10404.1
Hypothetical protein; KEGG: ftf:FTF1462c 9.4e-65 wbtC; UDP-glucose 4-epimerase K01784; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score:8.87.
  
 0.990
EDP10406.1
Hypothetical protein; KEGG: lsl:LSL_0995 1.7e-113 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase K00100:K01726; COG: COG1086 Predicted nucleoside-diphosphate sugar epimerases; Psort location: CytoplasmicMembrane, score:9.97.
 
 0.959
EDP10477.1
Chain length determinant protein; KEGG: rxy:Rxyl_0560 2.6e-14 protein-tyrosine kinase K08252; COG: COG3944 Capsular polysaccharide biosynthesis protein.
 
 
 0.915
EDP10479.1
Capsular exopolysaccharide family; KEGG: bsu:BG12508 1.7e-33 ywqD; similar to capsular polysaccharide biosynthesis protein K00903; COG: COG0489 ATPases involved in chromosome partitioning; Psort location: CytoplasmicMembrane, score:9.82.
 
 
 0.904
EDP10407.1
Hypothetical protein; KEGG: lsl:LSL_0991 2.5e-71 rfaG; glycosyltransferase K00754; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score:8.87.
  
 0.826
EDP10402.1
Hypothetical protein; KEGG: eci:UTI89_C3373 1.5e-11 neuD; sialic acid synthase NeuD K00160; COG: COG0110 Acetyltransferase (isoleucine patch superfamily); Psort location: Cytoplasmic, score:8.87.
 
    0.809
EDP11194.1
Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.676
EDP10401.1
Hypothetical protein; COG: COG0250 Transcription antiterminator; Psort location: Cytoplasmic, score:8.87.
     
 0.671
EDP10160.1
O-antigen polymerase; KEGG: plu:plu4858 7.7e-05 rfaL; O-antigen ligase RfaL K02847; COG: COG3307 Lipid A core - O-antigen ligase and related enzymes; Psort location: CytoplasmicMembrane, score:9.99.
  
  
 0.652
cysE
KEGG: hpy:HP1210 3.7e-54 cysE; serine acetyltransferase (CysE) K00640; COG: COG1045 Serine acetyltransferase; Psort location: Cytoplasmic, score:9.98.
  
 
 0.597
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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