STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10410.1Hypothetical protein; KEGG: spd:SPD_1200 1.6e-31 glycosyl transferase, group 1 family protein K00754; COG: COG0438 Glycosyltransferase; Psort location: CytoplasmicMembrane, score:9.99. (818 aa)    
Predicted Functional Partners:
EDP10411.1
Hypothetical protein; KEGG: lsl:LSL_0986 5.0e-34 rfaG; glycosyltransferase; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score:8.87.
 
 0.916
EDP10407.1
Hypothetical protein; KEGG: lsl:LSL_0991 2.5e-71 rfaG; glycosyltransferase K00754; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score:8.87.
 
     0.915
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.905
EDP10412.1
Capsular polysaccharide biosynthesis protein CpsJ; KEGG: bce:BC5267 1.1e-40 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score:8.87.
 0.891
EDP10408.1
Hypothetical protein; KEGG: btk:BT9727_5106 4.0e-25 beta-1,3-N-acetylglucosaminyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score:8.87.
 
 0.884
cps4H
Capsular polysaccharide biosynthesis protein Cps4H; KEGG: lsl:LSL_1559 7.7e-38 rfaG; glycosyltransferase K00754; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score:8.87.
 
    
0.833
EDP10475.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: noc:Noc_1508 1.6e-46 undecaprenyl-phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score:9.49.
 
  
 0.748
rfbB
KEGG: ljo:LJ1049 2.2e-134 dTDP-D-glucose 4,6-dehydratase K01710; COG: COG1088 dTDP-D-glucose 4,6-dehydratase; Psort location: Cytoplasmic, score:8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.716
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
 
 0.713
EDP10414.1
Glycosyltransferase, group 2 family; KEGG: fth:FTH_1386 3.1e-17 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
 0.712
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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