STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10416.1KEGG: bld:BLi03357 0.0052 hypothetical protein K00924; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score:9.99. (469 aa)    
Predicted Functional Partners:
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score:8.87.
    
  0.875
EDP10475.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: noc:Noc_1508 1.6e-46 undecaprenyl-phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score:9.49.
  
  
 0.793
EDP10418.1
Hypothetical protein; KEGG: bce:BC5429 2.5e-23 beta-1,3-N-acetylglucosaminyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score:8.87.
  
  
 0.792
EDP10417.1
Hypothetical protein; KEGG: bcc:BCc_109 0.0030 nuoN; NADH dehydrogenase I chain N K00329; COG: NOG36355 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.99.
       0.757
EDP10480.1
Nucleotide sugar dehydrogenase; KEGG: spr:spr0318 1.1e-171 cps2K; UDPglucose 6-dehydrogenase K00012; COG: COG1004 Predicted UDP-glucose 6-dehydrogenase; Psort location: Cytoplasmic, score:8.87.
  
  
 0.686
rfbB
KEGG: ljo:LJ1049 2.2e-134 dTDP-D-glucose 4,6-dehydratase K01710; COG: COG1088 dTDP-D-glucose 4,6-dehydratase; Psort location: Cytoplasmic, score:8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.685
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.684
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.684
EDP10414.1
Glycosyltransferase, group 2 family; KEGG: fth:FTH_1386 3.1e-17 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.672
EDP10413.1
Hypothetical protein; KEGG: eco:b2045 2.2e-06 wcaK; predicted pyruvyl transferase; COG: COG2327 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.87.
  
  
 0.619
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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